mirror of
https://github.com/seaweedfs/seaweedfs.git
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bf8a9d2db1
* sync of deletions the fix * avoid return if only partiallyDeletedNeedles * refactor sync deletions
327 lines
12 KiB
Go
327 lines
12 KiB
Go
package shell
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import (
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"bytes"
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"context"
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"flag"
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"fmt"
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"github.com/seaweedfs/seaweedfs/weed/operation"
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"github.com/seaweedfs/seaweedfs/weed/pb"
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"github.com/seaweedfs/seaweedfs/weed/pb/volume_server_pb"
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"github.com/seaweedfs/seaweedfs/weed/storage/needle_map"
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"golang.org/x/exp/slices"
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"google.golang.org/grpc"
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"io"
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"math"
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"net/http"
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"time"
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)
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func init() {
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Commands = append(Commands, &commandVolumeCheckDisk{})
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}
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type commandVolumeCheckDisk struct {
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env *CommandEnv
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syncDeletions *bool
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}
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func (c *commandVolumeCheckDisk) Name() string {
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return "volume.check.disk"
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}
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func (c *commandVolumeCheckDisk) Help() string {
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return `check all replicated volumes to find and fix inconsistencies. It is optional and resource intensive.
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How it works:
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find all volumes that are replicated
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for each volume id, if there are more than 2 replicas, find one pair with the largest 2 in file count.
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for the pair volume A and B
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append entries in A and not in B to B
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append entries in B and not in A to A
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`
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}
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func (c *commandVolumeCheckDisk) Do(args []string, commandEnv *CommandEnv, writer io.Writer) (err error) {
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fsckCommand := flag.NewFlagSet(c.Name(), flag.ContinueOnError)
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slowMode := fsckCommand.Bool("slow", false, "slow mode checks all replicas even file counts are the same")
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verbose := fsckCommand.Bool("v", false, "verbose mode")
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volumeId := fsckCommand.Uint("volumeId", 0, "the volume id")
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applyChanges := fsckCommand.Bool("force", false, "apply the fix")
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c.syncDeletions = fsckCommand.Bool("syncDeleted", false, "sync of deletions the fix")
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nonRepairThreshold := fsckCommand.Float64("nonRepairThreshold", 0.3, "repair when missing keys is not more than this limit")
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if err = fsckCommand.Parse(args); err != nil {
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return nil
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}
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infoAboutSimulationMode(writer, *applyChanges, "-force")
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if err = commandEnv.confirmIsLocked(args); err != nil {
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return
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}
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c.env = commandEnv
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// collect topology information
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topologyInfo, _, err := collectTopologyInfo(commandEnv, 0)
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if err != nil {
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return err
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}
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volumeReplicas, _ := collectVolumeReplicaLocations(topologyInfo)
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// pick 1 pairs of volume replica
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fileCount := func(replica *VolumeReplica) uint64 {
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return replica.info.FileCount - replica.info.DeleteCount
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}
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for _, replicas := range volumeReplicas {
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if *volumeId > 0 && replicas[0].info.Id != uint32(*volumeId) {
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continue
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}
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slices.SortFunc(replicas, func(a, b *VolumeReplica) bool {
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return fileCount(a) > fileCount(b)
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})
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for len(replicas) >= 2 {
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a, b := replicas[0], replicas[1]
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if !*slowMode {
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if fileCount(a) == fileCount(b) {
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replicas = replicas[1:]
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continue
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}
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}
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if a.info.ReadOnly || b.info.ReadOnly {
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fmt.Fprintf(writer, "skipping readonly volume %d on %s and %s\n", a.info.Id, a.location.dataNode.Id, b.location.dataNode.Id)
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replicas = replicas[1:]
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continue
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}
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if err := c.syncTwoReplicas(a, b, *applyChanges, *nonRepairThreshold, *verbose, writer); err != nil {
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fmt.Fprintf(writer, "sync volume %d on %s and %s: %v\n", a.info.Id, a.location.dataNode.Id, b.location.dataNode.Id, err)
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}
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replicas = replicas[1:]
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}
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}
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return nil
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}
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func (c *commandVolumeCheckDisk) syncTwoReplicas(a *VolumeReplica, b *VolumeReplica, applyChanges bool, nonRepairThreshold float64, verbose bool, writer io.Writer) (err error) {
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aHasChanges, bHasChanges := true, true
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for aHasChanges || bHasChanges {
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if aHasChanges, bHasChanges, err = c.checkBoth(a, b, applyChanges, nonRepairThreshold, verbose, writer); err != nil {
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return err
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}
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}
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return nil
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}
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func (c *commandVolumeCheckDisk) checkBoth(a *VolumeReplica, b *VolumeReplica, applyChanges bool, nonRepairThreshold float64, verbose bool, writer io.Writer) (aHasChanges bool, bHasChanges bool, err error) {
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aDB, bDB := needle_map.NewMemDb(), needle_map.NewMemDb()
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defer func() {
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aDB.Close()
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bDB.Close()
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}()
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// read index db
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readIndexDbCutoffFrom := uint64(time.Now().UnixNano())
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if err = c.readIndexDatabase(aDB, a.info.Collection, a.info.Id, pb.NewServerAddressFromDataNode(a.location.dataNode), verbose, writer); err != nil {
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return true, true, fmt.Errorf("readIndexDatabase %s volume %d: %v", a.location.dataNode, a.info.Id, err)
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}
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if err := c.readIndexDatabase(bDB, b.info.Collection, b.info.Id, pb.NewServerAddressFromDataNode(b.location.dataNode), verbose, writer); err != nil {
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return true, true, fmt.Errorf("readIndexDatabase %s volume %d: %v", b.location.dataNode, b.info.Id, err)
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}
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// find and make up the differences
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if aHasChanges, err = c.doVolumeCheckDisk(bDB, aDB, b, a, verbose, writer, applyChanges, nonRepairThreshold, readIndexDbCutoffFrom); err != nil {
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return true, true, fmt.Errorf("doVolumeCheckDisk source:%s target:%s volume %d: %v", b.location.dataNode.Id, a.location.dataNode.Id, b.info.Id, err)
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}
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if bHasChanges, err = c.doVolumeCheckDisk(aDB, bDB, a, b, verbose, writer, applyChanges, nonRepairThreshold, readIndexDbCutoffFrom); err != nil {
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return true, true, fmt.Errorf("doVolumeCheckDisk source:%s target:%s volume %d: %v", a.location.dataNode.Id, b.location.dataNode.Id, a.info.Id, err)
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}
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return
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}
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func (c *commandVolumeCheckDisk) doVolumeCheckDisk(minuend, subtrahend *needle_map.MemDb, source, target *VolumeReplica, verbose bool, writer io.Writer, applyChanges bool, nonRepairThreshold float64, cutoffFromAtNs uint64) (hasChanges bool, err error) {
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// find missing keys
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// hash join, can be more efficient
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var missingNeedles []needle_map.NeedleValue
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var partiallyDeletedNeedles []needle_map.NeedleValue
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var counter int
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doCutoffOfLastNeedle := true
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minuend.DescendingVisit(func(minuendValue needle_map.NeedleValue) error {
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counter++
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if subtrahendValue, found := subtrahend.Get(minuendValue.Key); !found {
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if minuendValue.Size.IsDeleted() {
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return nil
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}
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if doCutoffOfLastNeedle {
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if needleMeta, err := readNeedleMeta(c.env.option.GrpcDialOption, pb.NewServerAddressFromDataNode(source.location.dataNode), source.info.Id, minuendValue); err == nil {
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// needles older than the cutoff time are not missing yet
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if needleMeta.AppendAtNs > cutoffFromAtNs {
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return nil
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}
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doCutoffOfLastNeedle = false
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}
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}
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missingNeedles = append(missingNeedles, minuendValue)
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} else {
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if minuendValue.Size.IsDeleted() && !subtrahendValue.Size.IsDeleted() {
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partiallyDeletedNeedles = append(partiallyDeletedNeedles, minuendValue)
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}
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if doCutoffOfLastNeedle {
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doCutoffOfLastNeedle = false
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}
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}
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return nil
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})
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fmt.Fprintf(writer, "volume %d %s has %d entries, %s missed %d and partially deleted %d entries\n",
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source.info.Id, source.location.dataNode.Id, counter, target.location.dataNode.Id, len(missingNeedles), len(partiallyDeletedNeedles))
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if counter == 0 || (len(missingNeedles) == 0 && len(partiallyDeletedNeedles) == 0) {
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return false, nil
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}
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missingNeedlesFraction := float64(len(missingNeedles)) / float64(counter)
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if missingNeedlesFraction > nonRepairThreshold {
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return false, fmt.Errorf(
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"failed to start repair volume %d, percentage of missing keys is greater than the threshold: %.2f > %.2f",
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source.info.Id, missingNeedlesFraction, nonRepairThreshold)
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}
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for _, needleValue := range missingNeedles {
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needleBlob, err := readSourceNeedleBlob(c.env.option.GrpcDialOption, pb.NewServerAddressFromDataNode(source.location.dataNode), source.info.Id, needleValue)
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if err != nil {
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return hasChanges, err
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}
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if !applyChanges {
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continue
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}
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if verbose {
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fmt.Fprintf(writer, "read %s %s => %s\n", needleValue.Key.FileId(source.info.Id), source.location.dataNode.Id, target.location.dataNode.Id)
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}
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hasChanges = true
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if err = c.writeNeedleBlobToTarget(pb.NewServerAddressFromDataNode(target.location.dataNode), source.info.Id, needleValue, needleBlob); err != nil {
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return hasChanges, err
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}
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}
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if *c.syncDeletions && len(partiallyDeletedNeedles) > 0 {
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var fidList []string
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for _, needleValue := range partiallyDeletedNeedles {
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fidList = append(fidList, needleValue.Key.FileId(source.info.Id))
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if verbose {
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fmt.Fprintf(writer, "delete %s %s => %s\n", needleValue.Key.FileId(source.info.Id), source.location.dataNode.Id, target.location.dataNode.Id)
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}
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}
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deleteResults, deleteErr := operation.DeleteFilesAtOneVolumeServer(
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pb.NewServerAddressFromDataNode(target.location.dataNode),
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c.env.option.GrpcDialOption, fidList, false)
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if deleteErr != nil {
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return hasChanges, deleteErr
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}
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for _, deleteResult := range deleteResults {
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if deleteResult.Status == http.StatusAccepted {
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hasChanges = true
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return
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}
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}
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}
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return
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}
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func readSourceNeedleBlob(grpcDialOption grpc.DialOption, sourceVolumeServer pb.ServerAddress, volumeId uint32, needleValue needle_map.NeedleValue) (needleBlob []byte, err error) {
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err = operation.WithVolumeServerClient(false, sourceVolumeServer, grpcDialOption, func(client volume_server_pb.VolumeServerClient) error {
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resp, err := client.ReadNeedleBlob(context.Background(), &volume_server_pb.ReadNeedleBlobRequest{
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VolumeId: volumeId,
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Offset: needleValue.Offset.ToActualOffset(),
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Size: int32(needleValue.Size),
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})
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if err != nil {
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return err
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}
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needleBlob = resp.NeedleBlob
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return nil
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})
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return
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}
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func (c *commandVolumeCheckDisk) writeNeedleBlobToTarget(targetVolumeServer pb.ServerAddress, volumeId uint32, needleValue needle_map.NeedleValue, needleBlob []byte) error {
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return operation.WithVolumeServerClient(false, targetVolumeServer, c.env.option.GrpcDialOption, func(client volume_server_pb.VolumeServerClient) error {
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_, err := client.WriteNeedleBlob(context.Background(), &volume_server_pb.WriteNeedleBlobRequest{
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VolumeId: volumeId,
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NeedleId: uint64(needleValue.Key),
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Size: int32(needleValue.Size),
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NeedleBlob: needleBlob,
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})
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return err
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})
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}
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func (c *commandVolumeCheckDisk) readIndexDatabase(db *needle_map.MemDb, collection string, volumeId uint32, volumeServer pb.ServerAddress, verbose bool, writer io.Writer) error {
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var buf bytes.Buffer
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if err := c.copyVolumeIndexFile(collection, volumeId, volumeServer, &buf, verbose, writer); err != nil {
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return err
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}
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if verbose {
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fmt.Fprintf(writer, "load collection %s volume %d index size %d from %s ...\n", collection, volumeId, buf.Len(), volumeServer)
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}
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return db.LoadFilterFromReaderAt(bytes.NewReader(buf.Bytes()), true, false)
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}
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func (c *commandVolumeCheckDisk) copyVolumeIndexFile(collection string, volumeId uint32, volumeServer pb.ServerAddress, buf *bytes.Buffer, verbose bool, writer io.Writer) error {
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return operation.WithVolumeServerClient(true, volumeServer, c.env.option.GrpcDialOption, func(volumeServerClient volume_server_pb.VolumeServerClient) error {
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ext := ".idx"
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copyFileClient, err := volumeServerClient.CopyFile(context.Background(), &volume_server_pb.CopyFileRequest{
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VolumeId: volumeId,
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Ext: ".idx",
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CompactionRevision: math.MaxUint32,
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StopOffset: math.MaxInt64,
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Collection: collection,
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IsEcVolume: false,
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IgnoreSourceFileNotFound: false,
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})
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if err != nil {
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return fmt.Errorf("failed to start copying volume %d%s: %v", volumeId, ext, err)
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}
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err = writeToBuffer(copyFileClient, buf)
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if err != nil {
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return fmt.Errorf("failed to copy %d%s from %s: %v", volumeId, ext, volumeServer, err)
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}
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return nil
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})
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}
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func writeToBuffer(client volume_server_pb.VolumeServer_CopyFileClient, buf *bytes.Buffer) error {
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for {
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resp, receiveErr := client.Recv()
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if receiveErr == io.EOF {
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break
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}
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if receiveErr != nil {
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return fmt.Errorf("receiving: %v", receiveErr)
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}
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buf.Write(resp.FileContent)
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}
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return nil
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}
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