add locating data inside the ec files

This commit is contained in:
Chris Lu 2019-05-19 03:01:58 -07:00
parent 87f63b9c08
commit 7c2c60c376
3 changed files with 205 additions and 32 deletions

View file

@ -34,10 +34,14 @@ func encodeData(file *os.File, enc reedsolomon.Encoder, startOffset, blockSize i
return nil
}
func openEcFiles(baseFileName string) (files []*os.File, err error){
func openEcFiles(baseFileName string, forRead bool) (files []*os.File, err error){
for i := 0; i< DataShardsCount+ParityShardsCount; i++{
fname := fmt.Sprintf("%s.ec%02d", baseFileName, i+1)
f, err := os.OpenFile(fname, os.O_TRUNC|os.O_CREATE|os.O_WRONLY, 0644)
openOption := os.O_TRUNC|os.O_CREATE|os.O_WRONLY
if forRead {
openOption = os.O_RDONLY
}
f, err := os.OpenFile(fname, openOption, 0644)
if err != nil {
return files, fmt.Errorf("failed to open file %s: %v", fname, err)
}

View file

@ -0,0 +1,68 @@
package erasure_coding
type Interval struct {
blockIndex int
innerBlockOffset int64
size uint32
isLargeBlock bool
}
func locateData(largeBlockLength, smallBlockLength int64, datSize int64, offset int64, size uint32) (intervals []Interval) {
blockIndex, isLargeBlock, innerBlockOffset := locateOffset(largeBlockLength, smallBlockLength, datSize, offset)
nLargeBlockRows := int(datSize / (largeBlockLength * DataShardsCount))
for size > 0 {
interval := Interval{
blockIndex: blockIndex,
innerBlockOffset: innerBlockOffset,
isLargeBlock: isLargeBlock,
}
blockRemaining := largeBlockLength - innerBlockOffset
if !isLargeBlock {
blockRemaining = smallBlockLength - innerBlockOffset
}
if int64(size) <= blockRemaining {
interval.size = size
intervals = append(intervals, interval)
return
}
interval.size = uint32(blockRemaining)
intervals = append(intervals, interval)
size -= interval.size
blockIndex += 1
if isLargeBlock && blockIndex == nLargeBlockRows*DataShardsCount {
isLargeBlock = false
blockIndex = 0
}
innerBlockOffset = 0
}
return
}
func locateOffset(largeBlockLength, smallBlockLength int64, datSize int64, offset int64) (blockIndex int, isLargeBlock bool, innerBlockOffset int64) {
largeRowSize := largeBlockLength * DataShardsCount
nLargeBlockRows := datSize / (largeBlockLength * DataShardsCount)
// if offset is within the large block area
if offset < nLargeBlockRows*largeRowSize {
isLargeBlock = true
blockIndex, innerBlockOffset = locateOffsetWithinBlocks(largeBlockLength, offset)
return
}
isLargeBlock = false
offset -= nLargeBlockRows * largeRowSize
blockIndex, innerBlockOffset = locateOffsetWithinBlocks(smallBlockLength, offset)
return
}
func locateOffsetWithinBlocks(blockLength int64, offset int64) (blockIndex int, innerBlockOffset int64) {
blockIndex = int(offset / blockLength)
innerBlockOffset = offset % blockLength
return
}

View file

@ -1,6 +1,7 @@
package erasure_coding
import (
"bytes"
"fmt"
"os"
"testing"
@ -11,28 +12,20 @@ import (
"github.com/klauspost/reedsolomon"
)
const (
largeBlockSize = 10000
smallBlockSize = 100
)
func TestEncodingDecoding(t *testing.T) {
largeBlockSize := int64(10000)
smallBlockSize := int64(100)
bufferSize := 50
baseFileName := "1"
file, err := os.OpenFile(baseFileName+".dat", os.O_RDONLY, 0)
err := generateEcFiles(baseFileName, bufferSize, largeBlockSize, smallBlockSize)
if err != nil {
t.Logf("failed to open dat file: %v", err)
t.Logf("generateEcFiles: %v", err)
}
fi, err := file.Stat()
if err != nil {
t.Logf("failed to stat dat file: %v", err)
}
err = encodeDatFile(fi.Size(), err, baseFileName, bufferSize, largeBlockSize, file, smallBlockSize)
if err != nil {
t.Logf("failed to stat dat file: %v", err)
}
file.Close()
err = writeSortedEcxFiles(baseFileName)
if err != nil {
t.Logf("writeSortedEcxFiles: %v", err)
@ -45,6 +38,24 @@ func TestEncodingDecoding(t *testing.T) {
}
func generateEcFiles(baseFileName string, bufferSize int, largeBlockSize int64, smallBlockSize int64) error {
file, err := os.OpenFile(baseFileName+".dat", os.O_RDONLY, 0)
if err != nil {
return fmt.Errorf("failed to open dat file: %v", err)
}
defer file.Close()
fi, err := file.Stat()
if err != nil {
return fmt.Errorf("failed to stat dat file: %v", err)
}
err = encodeDatFile(fi.Size(), err, baseFileName, bufferSize, largeBlockSize, file, smallBlockSize)
if err != nil {
return fmt.Errorf("encodeDatFile: %v", err)
}
return nil
}
func encodeDatFile(remainingSize int64, err error, baseFileName string, bufferSize int, largeBlockSize int64, file *os.File, smallBlockSize int64) error {
var processedSize int64
enc, err := reedsolomon.New(DataShardsCount, ParityShardsCount)
@ -52,7 +63,7 @@ func encodeDatFile(remainingSize int64, err error, baseFileName string, bufferSi
return fmt.Errorf("failed to create encoder: %v", err)
}
buffers := make([][]byte, DataShardsCount+ParityShardsCount)
outputs, err := openEcFiles(baseFileName)
outputs, err := openEcFiles(baseFileName, false)
defer closeEcFiles(outputs)
if err != nil {
return fmt.Errorf("failed to open dat file: %v", err)
@ -81,21 +92,11 @@ func encodeDatFile(remainingSize int64, err error, baseFileName string, bufferSi
func writeSortedEcxFiles(baseFileName string) (e error) {
var indexFile *os.File
if indexFile, e = os.OpenFile(baseFileName+".idx", os.O_RDONLY, 0644); e != nil {
return fmt.Errorf("cannot read Volume Index %s.idx: %v", baseFileName, e)
cm, err := readCompactMap(baseFileName)
if err != nil {
return fmt.Errorf("readCompactMap: %v", err)
}
cm := needle_map.NewCompactMap()
storage.WalkIndexFile(indexFile, func(key types.NeedleId, offset types.Offset, size uint32) error {
if !offset.IsZero() && size != types.TombstoneFileSize {
cm.Set(key, offset, size)
} else {
cm.Delete(key)
}
return nil
})
ecxFile, err := os.OpenFile(baseFileName+".ecx", os.O_TRUNC|os.O_CREATE|os.O_WRONLY, 0644)
if err != nil {
return fmt.Errorf("failed to open dat file: %v", err)
@ -116,6 +117,106 @@ func writeSortedEcxFiles(baseFileName string) (e error) {
}
func validateFiles(baseFileName string) error {
return nil
cm, err := readCompactMap(baseFileName)
if err != nil {
return fmt.Errorf("readCompactMap: %v", err)
}
datFile, err := os.OpenFile(baseFileName+".dat", os.O_RDONLY, 0)
if err != nil {
return fmt.Errorf("failed to open dat file: %v", err)
}
defer datFile.Close()
fi, err := datFile.Stat()
if err != nil {
return fmt.Errorf("failed to stat dat file: %v", err)
}
ecFiles, err := openEcFiles(baseFileName, true)
defer closeEcFiles(ecFiles)
err = cm.AscendingVisit(func(value needle_map.NeedleValue) error {
return assertSame(datFile, fi.Size(), ecFiles, value.Offset, value.Size)
})
if err != nil {
return fmt.Errorf("failed to check ec files: %v", err)
}
return nil
}
func readCompactMap(baseFileName string) (*needle_map.CompactMap, error) {
indexFile, err := os.OpenFile(baseFileName+".idx", os.O_RDONLY, 0644)
if err != nil {
return nil, fmt.Errorf("cannot read Volume Index %s.idx: %v", baseFileName, err)
}
defer indexFile.Close()
cm := needle_map.NewCompactMap()
err = storage.WalkIndexFile(indexFile, func(key types.NeedleId, offset types.Offset, size uint32) error {
if !offset.IsZero() && size != types.TombstoneFileSize {
cm.Set(key, offset, size)
} else {
cm.Delete(key)
}
return nil
})
return cm, err
}
func assertSame(datFile *os.File, datSize int64, ecFiles []*os.File, offset types.Offset, size uint32) error {
data, err := readDatFile(datFile, offset, size)
if err != nil {
return fmt.Errorf("failed to read dat file: %v", err)
}
ecData, err := readEcFile(datSize, ecFiles, offset, size)
if err != nil {
return fmt.Errorf("failed to read ec file: %v", err)
}
if bytes.Compare(data, ecData) != 0 {
return fmt.Errorf("unexpected data read")
}
return nil
}
func readDatFile(datFile *os.File, offset types.Offset, size uint32) ([]byte, error) {
data := make([]byte, size)
n, err := datFile.ReadAt(data, offset.ToAcutalOffset())
if err != nil {
return nil, fmt.Errorf("failed to ReadAt dat file: %v", err)
}
if n != int(size) {
return nil, fmt.Errorf("unexpected read size %d, expected %d", n, size)
}
return data, nil
}
func readEcFile(datSize int64, ecFiles []*os.File, offset types.Offset, size uint32) ([]byte, error) {
return nil, nil
}
func TestLocateData(t *testing.T) {
intervals := locateData(largeBlockSize, smallBlockSize, DataShardsCount*largeBlockSize+1, DataShardsCount*largeBlockSize, 1)
if len(intervals) != 1 {
t.Errorf("unexpected interval size %d", len(intervals))
}
if !intervals[0].sameAs(Interval{0, 0, 1, false}) {
t.Errorf("unexpected interval %+v", intervals[0])
}
intervals = locateData(largeBlockSize, smallBlockSize, DataShardsCount*largeBlockSize+1, DataShardsCount*largeBlockSize/2+100, DataShardsCount*largeBlockSize+1 - DataShardsCount*largeBlockSize/2-100)
fmt.Printf("%+v\n", intervals)
}
func (this Interval) sameAs(that Interval) bool {
return this.isLargeBlock == that.isLargeBlock &&
this.innerBlockOffset == that.innerBlockOffset &&
this.blockIndex == that.blockIndex &&
this.size == that.size
}